Generate a sample of species, weighted by their score
generate_sample(taxon_scores, ntax, phy, pd_weighting, min.prob = 0.01, max.prob = 0.99)
| taxon_scores | The vector of scores for taxa |
|---|---|
| ntax | The number of taxa you want returned |
| phy | Phylogeny to prune |
| pd_weighting | How much to weight the pd vs the popularity |
| min.prob | The minimum probability of sampling for a taxon |
| max.prob | The maximum probability of sampling for a taxon |
A list: selected=vector of names of sampled taxa to include, and score=sum of the taxon metrics for these taxa