Create partition file for raxml

This makes two files: one with partitions for cpDNA, mtDNA, 18S, 28S, and the rest (partitions.txt) and one with each gene in its own partition (partitions_bygene.txt)

Usage

CreatePartitionFile(dna_combined, seqs_final)

Arguments

dna_combined

sequences

seqs_final

Final sequences directory

Value

File name