AddHybridization()
Add hybrid events to a phy.graph
BMhyb()
Optimize model
BMhybExhaustive()
Exhaustively evaluate models
ComputeLikelihood()
Compute the likelihood for a set of parameters
ComputeVCV()
Compute the variance-covariance matrix
ConvertEvonetToIgraphWithNodeNumbers()
Convert an evonet object into igraph
CreateHybridlessEvonet()
Convert phylo object to evonet
GetConvexHull()
Get convex hull at a given threshold
SimulateNetwork()
Simulate a phylogenetic network
SimulateTips()
Simulate trait data
cichlid
Cichlid dataset
nicotiana
Nicotiana dataset
plot(<BMhybResult>)
Plot BMhyb result